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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST008337
species:
Vitis vinifera
miRNA family:
MIR159
source:
miRNEST
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA
miRNA*
GCCTTCCTTGAAGTCCAATAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GGGTTTTGGAGTG
GCCTTCCTTGAAGTCCAATAG
AGGGTCTTACTGGGTAGATTCATCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGG
GCATTGGATAGGCTTGTGGCTTGCATCTCTCAGGAGCTGCATTATCCAAGTTTAGATCCTTG
TTTGGATTGAAGGGAGCTCTA
CACCTCTCTC
dot-bracket secondary structure
(((....((.(((
(..((((((..(((((((..(
(((((((.(((((((((((((((..........)))))))((((((.(((((((.(((.......)
))...))))))).))))))..((((.(((....))).)))).))))).)))..)))))))).
.)))))))..))))))..)))
).)).)))..
SIMILARITIES
miRBase
vvi-MIR159c
:
5e-91
PMRD
vvi-miR159c
:
5e-91
microPC
miR159
:
2e-81
UniProt
no hits
RFAM
MIR159: 5e-91
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence